module Depth::FileIO

Defined in:

depth/io/bed_reader.cr
depth/io/d4_output.cr
depth/io/output_manager.cr

Class Method Summary

• .parse_region_str(s : String, targets : Array(Depth::Core::Target)) : Depth::Core::Region | Nil

  Parse region like: chr1, chr1:100-200, or BED line

• .read_bed(path : String, targets : Array(Depth::Core::Target)) : Hash(String, Array(Depth::Core::Region))

  BED reader → {chrom => [Region]}

Class Method Detail