module Depth::Core::Cigar

Direct including types

• Depth::Core::CoverageCalculator

Defined in:

depth/core/cigar.cr

Instance Method Summary

• #cigar_each_event(cigar, ipos : Int32, & : Int32, Int32 -> )

  Streaming iterator for start/end events (pos, +1/-1) without allocations

• #cigar_each_segment(cigar, ipos : Int32, & : Tuple(Int32, Int32) -> )

  Stream segments without building an array

• #cigar_fill_events!(cigar, ipos : Int32, evbuf : Array(Tuple(Int32, Int32))) : Nil

  CIGAR → start/end events on reference, filling provided buffer

• #cigar_segments(cigar, ipos : Int32) : Array(Tuple(Int32, Int32))

  Build contiguous reference-aligned segments [start, stop) for M/= /X parts.

• #cigar_start_end_events(cigar, ipos : Int32) : Array(Tuple(Int32, Int32))

  Back-compatible helper that allocates a new array (prefer cigar_fill_events!)

• #inc_coverage(cigar, ipos : Int32, a : Coverage)

Instance Method Detail