class
Depth::Config
- Depth::Config
- Reference
- Object
Defined in:
depth/config.crInstance Method Summary
- #bed_path : String | Nil
- #by : String
- #by=(by : String)
- #chrom : String
- #chrom=(chrom : String)
- #exclude_flag : UInt16
- #exclude_flag=(exclude_flag : UInt16)
- #fast_mode=(fast_mode : Bool)
- #fast_mode? : Bool
- #fragment_mode=(fragment_mode : Bool)
- #fragment_mode? : Bool
- #has_quantize? : Bool
- #has_regions? : Bool
- #has_thresholds? : Bool
- #include_flag : UInt16
- #include_flag=(include_flag : UInt16)
- #mapq : Int32
- #mapq=(mapq : Int32)
- #max_frag_len : Int32
- #max_frag_len=(max_frag_len : Int32)
- #min_frag_len : Int32
- #min_frag_len=(min_frag_len : Int32)
-
#mos_style=(mos_style : Bool)
When true, use mosdepth-compatible names (mosdepth.); otherwise mopdepth.
-
#mos_style? : Bool
When true, use mosdepth-compatible names (mosdepth.); otherwise mopdepth.
- #no_per_base=(no_per_base : Bool)
- #no_per_base? : Bool
- #path : String
- #path=(path : String)
- #prefix : String
- #prefix=(prefix : String)
- #quantize : String
- #quantize=(quantize : String)
- #quantize_args : Array(Int32)
- #read_groups_str : String
- #read_groups_str=(read_groups_str : String)
- #threads : Int32
- #threads=(threads : Int32)
- #threshold_values : Array(Int32)
- #thresholds : Array(Int32)
- #thresholds=(thresholds : Array(Int32))
- #thresholds_str : String
- #thresholds_str=(thresholds_str : String)
- #to_options : Core::Options
- #use_median=(use_median : Bool)
- #use_median? : Bool
- #validate!
- #window_size : Int32
Instance Method Detail
def mos_style=(mos_style : Bool)
#
When true, use mosdepth-compatible names (mosdepth.); otherwise mopdepth.