module Minimap2

Defined in:

minimap2.cr
minimap2/aligner.cr
minimap2/builder.cr
minimap2/ffi.cr
minimap2/mappy.cr
minimap2/types.cr

Constant Summary

MM_F_CIGAR = 4_i64

MM_F_OUT_CS = 64_i64

VERSION = {{ (`shards version /home/runner/work/minimap2-cr/minimap2-cr/src`).chomp.stringify }}

Class Method Summary

• .fetch_seq(idx : Pointer(LibMinimap2::MmIdxT), name : String, start : Int32 = 0, stop : Int32 = Int32::MAX) : String | Nil
• .idx_seq(seq : String, w : Int32, k : Int32, is_hpc : Bool = false, bucket_bits : Int32 = 14) : Pointer(LibMinimap2::MmIdxT)
• .revcomp(seq : String) : String
• .revcomp(seq : Bytes) : String

Class Method Detail