Method List
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#a Minibwa::Options
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#adap= Minibwa::Options
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#adap? Minibwa::Options
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#b Minibwa::Options
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#b_ambi Minibwa::Options
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#b_ts Minibwa::Options
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#best_n Minibwa::Options
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#blen Minibwa::Hit
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build Minibwa::Index
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build MinibwaIndex
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build_full_cigar Minibwa::Sam
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#bw Minibwa::Options
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#bw_long Minibwa::Options
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#cap_kalloc Minibwa::Options
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#chain_gap_scale Minibwa::Options
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#cigar Minibwa::Hit
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#cigar_str Minibwa::Hit
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#cnt Minibwa::Hit
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#copy_comment= Minibwa::Options
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#copy_comment? Minibwa::Options
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#cs_flag Minibwa::Hit
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#ctg Minibwa::Hit
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#ctg_len Minibwa::Index
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#ctg_name Minibwa::Index
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#dp_max Minibwa::Hit
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#dp_max0 Minibwa::Hit
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#dp_max2 Minibwa::Hit
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#dp_score Minibwa::Hit
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#e Minibwa::Options
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#e2 Minibwa::Options
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#end_bonus Minibwa::Options
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#eqx= Minibwa::Options
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#eqx? Minibwa::Options
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#flag Minibwa::Options
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#flt Minibwa::Hit
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format Minibwa::Sam
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#frac_high Minibwa::Hit
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#full_cigar_str Minibwa::Hit
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#hash Minibwa::Hit
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header Minibwa::Sam
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#initialize Minibwa::Buffer
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#initialize Minibwa::Options
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#inspect Minibwa::Hit
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#inspect Minibwa::Options
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#inv Minibwa::Hit
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load Minibwa::Index
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load_mmap Minibwa::Index
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#long_mode= Minibwa::Options
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#long_mode? Minibwa::Options
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#map Minibwa::Index
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#map_batch Minibwa::Index
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#mapq Minibwa::Hit
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#mask_len Minibwa::Options
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#mask_level Minibwa::Options
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#max_chain_iter Minibwa::Options
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#max_chain_skip Minibwa::Options
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#max_gap Minibwa::Options
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#max_mb_size Minibwa::Options
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#max_occ Minibwa::Options
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#max_pe_ins Minibwa::Options
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#max_rescue Minibwa::Options
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#max_sr_len Minibwa::Options
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#max_sub_occ Minibwa::Options
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#max_sw_mat Minibwa::Options
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#mb_size Minibwa::Options
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#meth= Minibwa::Options
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#meth? Minibwa::Options
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#min_chain_score Minibwa::Options
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#min_dp_max Minibwa::Options
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#min_ksw_len Minibwa::Options
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#min_len Minibwa::Options
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#mlen Minibwa::Hit
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#n_ambi Minibwa::Hit
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#n_sub Minibwa::Hit
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#n_thread Minibwa::Options
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#no_aln= Minibwa::Options
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#no_aln? Minibwa::Options
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#no_kalloc= Minibwa::Options
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#no_kalloc? Minibwa::Options
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#no_pairing= Minibwa::Options
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#no_pairing? Minibwa::Options
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#no_unmap= Minibwa::Options
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#no_unmap? Minibwa::Options
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#out_n Minibwa::Options
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#out_s Minibwa::Options
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#paf= Minibwa::Options
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#paf? Minibwa::Options
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#pe= Minibwa::Options
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#pe? Minibwa::Options
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#pe_avg Minibwa::Options
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#pe_hi Minibwa::Options
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#pe_lo Minibwa::Options
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#pe_predef= Minibwa::Options
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#pe_predef? Minibwa::Options
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#pe_std Minibwa::Options
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#pen_unpair Minibwa::Options
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#preset Minibwa::Options
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#preset! Minibwa::Options
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#pri_ratio Minibwa::Options
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#primary5= Minibwa::Options
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#primary5? Minibwa::Options
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#proper_pair Minibwa::Hit
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#q Minibwa::Options
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#q2 Minibwa::Options
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#qe Minibwa::Hit
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#qs Minibwa::Hit
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#rescued Minibwa::Hit
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#reset! Minibwa::Buffer
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#rev Minibwa::Hit
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#sam_pri Minibwa::Hit
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#sb_len Minibwa::Options
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#sb_seq Minibwa::Options
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#score Minibwa::Hit
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#score0 Minibwa::Hit
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#second_seq= Minibwa::Options
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#second_seq? Minibwa::Options
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#seed Minibwa::Options
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#seed_ratio Minibwa::Hit
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#split Minibwa::Hit
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#split_inv Minibwa::Hit
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#strand Minibwa::Hit
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#subsc Minibwa::Hit
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#supp_soft= Minibwa::Options
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#supp_soft? Minibwa::Options
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#te Minibwa::Hit
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#tid Minibwa::Hit
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#tlen Minibwa::Hit
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#to_h Minibwa::Options
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#ts Minibwa::Hit
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#write_cs= Minibwa::Options
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#write_cs? Minibwa::Options
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#write_ds= Minibwa::Options
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#write_ds? Minibwa::Options
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#write_md= Minibwa::Options
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#write_md? Minibwa::Options
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#xa_max Minibwa::Options
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#zdrop Minibwa::Options
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#zdrop_inv Minibwa::Options