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#& HTS::Bam::Flag
#<< HTS::Bam
#<< HTS::Bcf
#<< HTS::Bam::Flag
#<< HTS::Bam::Header
#== HTS::Bam::Cigar
#>> HTS::Bam::Flag
#[] HTS::Faidx
#[] HTS::Bam::Aux
#[] HTS::Bcf::Info
#[] HTS::Bcf::Format
#[] HTS::Faidx::Sequence
#^ HTS::Bam::Flag
#add_key HTS::Bcf::HeaderRecord
#add_sample HTS::Bcf::Header
#alleles HTS::Bcf::Record
#alt HTS::Bcf
#alt HTS::Bcf::Record
#append HTS::Bcf::Header
#array HTS::Bam::Cigar
attach_function HTS::LibHTS
#aux HTS::Bam
#aux HTS::Bam::Record
bam_aux2A HTS::LibHTS
bam_aux2Z HTS::LibHTS
bam_aux2f HTS::LibHTS
bam_aux2i HTS::LibHTS
bam_auxB2f HTS::LibHTS
bam_auxB2i HTS::LibHTS
bam_auxB_len HTS::LibHTS
bam_aux_append HTS::LibHTS
bam_aux_del HTS::LibHTS
bam_aux_first HTS::LibHTS
bam_aux_get HTS::LibHTS
bam_aux_next HTS::LibHTS
bam_aux_remove HTS::LibHTS
bam_aux_update_array HTS::LibHTS
bam_aux_update_float HTS::LibHTS
bam_aux_update_int HTS::LibHTS
bam_aux_update_str HTS::LibHTS
bam_cigar2qlen HTS::LibHTS
bam_cigar2rlen HTS::LibHTS
bam_cigar_gen HTS::LibHTS
bam_cigar_op HTS::LibHTS
bam_cigar_opchr HTS::LibHTS
bam_cigar_oplen HTS::LibHTS
bam_cigar_type HTS::LibHTS
bam_copy1 HTS::LibHTS
bam_destroy1 HTS::LibHTS
bam_dup1 HTS::LibHTS
bam_endpos HTS::LibHTS
bam_flag2str HTS::LibHTS
bam_get_aux HTS::LibHTS
bam_get_cigar HTS::LibHTS
bam_get_l_aux HTS::LibHTS
bam_get_qname HTS::LibHTS
bam_get_qual HTS::LibHTS
bam_get_seq HTS::LibHTS
bam_hdr_read HTS::LibHTS
bam_hdr_write HTS::LibHTS
bam_index_load HTS::LibHTS
bam_init1 HTS::LibHTS
bam_is_mrev HTS::LibHTS
bam_is_rev HTS::LibHTS
bam_mods_at_next_pos HTS::LibHTS
bam_mods_at_qpos HTS::LibHTS
bam_mods_query_type HTS::LibHTS
bam_mods_queryi HTS::LibHTS
bam_mods_recorded HTS::LibHTS
bam_mplp64_auto HTS::LibHTS
bam_mplp_auto HTS::LibHTS
bam_mplp_constructor HTS::LibHTS
bam_mplp_destroy HTS::LibHTS
bam_mplp_destructor HTS::LibHTS
bam_mplp_init HTS::LibHTS
bam_mplp_init_overlaps HTS::LibHTS
bam_mplp_reset HTS::LibHTS
bam_mplp_set_maxcnt HTS::LibHTS
bam_next_basemod HTS::LibHTS
bam_parse_basemod HTS::LibHTS
bam_parse_basemod2 HTS::LibHTS
bam_parse_cigar HTS::LibHTS
bam_plp64_auto HTS::LibHTS
bam_plp64_next HTS::LibHTS
bam_plp_auto HTS::LibHTS
bam_plp_constructor HTS::LibHTS
bam_plp_destroy HTS::LibHTS
bam_plp_destructor HTS::LibHTS
bam_plp_init HTS::LibHTS
bam_plp_insertion HTS::LibHTS
bam_plp_insertion_mod HTS::LibHTS
bam_plp_next HTS::LibHTS
bam_plp_push HTS::LibHTS
bam_plp_reset HTS::LibHTS
bam_plp_set_maxcnt HTS::LibHTS
bam_read1 HTS::LibHTS
bam_seqi HTS::LibHTS
bam_set1 HTS::LibHTS
bam_set_qname HTS::LibHTS
bam_set_seqi HTS::LibHTS
bam_str2flag HTS::LibHTS
bam_write1 HTS::LibHTS
#base HTS::Bam::Record
#base_qual HTS::Bam::Record
bcf_add_filter HTS::LibHTS
bcf_add_id HTS::LibHTS
bcf_alleles2gt HTS::LibHTS
bcf_clear HTS::LibHTS
bcf_copy HTS::LibHTS
bcf_destroy HTS::LibHTS
bcf_dup HTS::LibHTS
bcf_empty HTS::LibHTS
bcf_enc_vchar HTS::LibHTS
bcf_enc_vfloat HTS::LibHTS
bcf_enc_vint HTS::LibHTS
bcf_float_missing HTS::LibHTS
bcf_float_vector_end HTS::LibHTS
bcf_fmt_array HTS::LibHTS
bcf_fmt_sized_array HTS::LibHTS
bcf_get_fmt HTS::LibHTS
bcf_get_fmt_id HTS::LibHTS
bcf_get_format_char HTS::LibHTS
bcf_get_format_float HTS::LibHTS
bcf_get_format_int32 HTS::LibHTS
bcf_get_format_string HTS::LibHTS
bcf_get_format_values HTS::LibHTS
bcf_get_genotypes HTS::LibHTS
bcf_get_info HTS::LibHTS
bcf_get_info_flag HTS::LibHTS
bcf_get_info_float HTS::LibHTS
bcf_get_info_id HTS::LibHTS
bcf_get_info_int32 HTS::LibHTS
bcf_get_info_string HTS::LibHTS
bcf_get_info_values HTS::LibHTS
bcf_get_variant_type HTS::LibHTS
bcf_get_variant_types HTS::LibHTS
bcf_gt_allele HTS::LibHTS
bcf_gt_is_missing HTS::LibHTS
bcf_gt_is_phased HTS::LibHTS
bcf_gt_missing HTS::LibHTS
bcf_gt_phased HTS::LibHTS
bcf_gt_unphased HTS::LibHTS
bcf_has_filter HTS::LibHTS
bcf_has_variant_type HTS::LibHTS
bcf_has_variant_types HTS::LibHTS
bcf_hdr_add_hrec HTS::LibHTS
bcf_hdr_add_sample HTS::LibHTS
bcf_hdr_append HTS::LibHTS
bcf_hdr_destroy HTS::LibHTS
bcf_hdr_dup HTS::LibHTS
bcf_hdr_format HTS::LibHTS
bcf_hdr_get_hrec HTS::LibHTS
bcf_hdr_get_version HTS::LibHTS
bcf_hdr_id2coltype HTS::LibHTS
bcf_hdr_id2int HTS::LibHTS
bcf_hdr_id2length HTS::LibHTS
bcf_hdr_id2name HTS::LibHTS
bcf_hdr_id2number HTS::LibHTS
bcf_hdr_id2type HTS::LibHTS
bcf_hdr_init HTS::LibHTS
bcf_hdr_int2id HTS::LibHTS
bcf_hdr_merge HTS::LibHTS
bcf_hdr_name2id HTS::LibHTS
bcf_hdr_nsamples HTS::LibHTS
bcf_hdr_parse HTS::LibHTS
bcf_hdr_parse_line HTS::LibHTS
bcf_hdr_printf HTS::LibHTS
bcf_hdr_read HTS::LibHTS
bcf_hdr_remove HTS::LibHTS
bcf_hdr_seqnames HTS::LibHTS
bcf_hdr_set HTS::LibHTS
bcf_hdr_set_samples HTS::LibHTS
bcf_hdr_set_version HTS::LibHTS
bcf_hdr_subset HTS::LibHTS
bcf_hdr_sync HTS::LibHTS
bcf_hdr_write HTS::LibHTS
bcf_hrec_add_key HTS::LibHTS
bcf_hrec_destroy HTS::LibHTS
bcf_hrec_dup HTS::LibHTS
bcf_hrec_find_key HTS::LibHTS
bcf_hrec_format HTS::LibHTS
bcf_hrec_set_val HTS::LibHTS
bcf_idx_init HTS::LibHTS
bcf_idx_save HTS::LibHTS
bcf_index_build HTS::LibHTS
bcf_index_build2 HTS::LibHTS
bcf_index_build3 HTS::LibHTS
bcf_index_load HTS::LibHTS
bcf_index_load2 HTS::LibHTS
bcf_index_load3 HTS::LibHTS
bcf_index_seqnames HTS::LibHTS
bcf_init HTS::LibHTS
bcf_int16_missing HTS::LibHTS
bcf_int16_vector_end HTS::LibHTS
bcf_int32_missing HTS::LibHTS
bcf_int32_vector_end HTS::LibHTS
bcf_int64_missing HTS::LibHTS
bcf_int64_vector_end HTS::LibHTS
bcf_int8_missing HTS::LibHTS
bcf_int8_vector_end HTS::LibHTS
bcf_is_snp HTS::LibHTS
bcf_itr_queryi HTS::LibHTS
bcf_itr_querys HTS::LibHTS
bcf_read HTS::LibHTS
bcf_readrec HTS::LibHTS
bcf_remove_filter HTS::LibHTS
bcf_str_missing HTS::LibHTS
bcf_str_vector_end HTS::LibHTS
bcf_strerror HTS::LibHTS
bcf_subset HTS::LibHTS
bcf_subset_format HTS::LibHTS
bcf_translate HTS::LibHTS
bcf_unpack HTS::LibHTS
bcf_update_alleles HTS::LibHTS
bcf_update_alleles_str HTS::LibHTS
bcf_update_filter HTS::LibHTS
bcf_update_format HTS::LibHTS
bcf_update_format_char HTS::LibHTS
bcf_update_format_float HTS::LibHTS
bcf_update_format_int32 HTS::LibHTS
bcf_update_format_string HTS::LibHTS
bcf_update_genotypes HTS::LibHTS
bcf_update_id HTS::LibHTS
bcf_update_info HTS::LibHTS
bcf_update_info_flag HTS::LibHTS
bcf_update_info_float HTS::LibHTS
bcf_update_info_int32 HTS::LibHTS
bcf_update_info_string HTS::LibHTS
bcf_variant_length HTS::LibHTS
bcf_write HTS::LibHTS
bgzf_block_write HTS::LibHTS
bgzf_check_EOF HTS::LibHTS
bgzf_close HTS::LibHTS
bgzf_compress HTS::LibHTS
bgzf_compression HTS::LibHTS
bgzf_dopen HTS::LibHTS
bgzf_flush HTS::LibHTS
bgzf_flush_try HTS::LibHTS
bgzf_getc HTS::LibHTS
bgzf_getline HTS::LibHTS
bgzf_hopen HTS::LibHTS
bgzf_index_build_init HTS::LibHTS
bgzf_index_dump HTS::LibHTS
bgzf_index_dump_hfile HTS::LibHTS
bgzf_index_load HTS::LibHTS
bgzf_index_load_hfile HTS::LibHTS
bgzf_is_bgzf HTS::LibHTS
bgzf_mt HTS::LibHTS
bgzf_open HTS::LibHTS
bgzf_peek HTS::LibHTS
bgzf_raw_read HTS::LibHTS
bgzf_raw_write HTS::LibHTS
bgzf_read HTS::LibHTS
bgzf_read_block HTS::LibHTS
bgzf_seek HTS::LibHTS
bgzf_set_cache_size HTS::LibHTS
bgzf_tell HTS::LibHTS
bgzf_thread_pool HTS::LibHTS
bgzf_useek HTS::LibHTS
bgzf_utell HTS::LibHTS
bgzf_write HTS::LibHTS
#bin HTS::Bam::Record
#bin= HTS::Bam::Record
#build_index HTS::Bam
#build_index HTS::Bcf
#build_index HTS::Tabix
#chrom HTS::Bam
#chrom HTS::Bcf
#chrom HTS::Bam::Record
#chrom HTS::Bcf::Record
#cigar HTS::Bam
#cigar HTS::Bam::Record
#cigar= HTS::Bam::Record
#clear_id HTS::Bcf::Record
#close HTS::Bam
#close HTS::Bcf
#close HTS::Hts
#close HTS::Faidx
#closed? HTS::Hts
#closed? HTS::Faidx
cram_block_append HTS::LibHTS
cram_block_get_comp_size HTS::LibHTS
cram_block_get_content_id HTS::LibHTS
cram_block_get_content_type HTS::LibHTS
cram_block_get_crc32 HTS::LibHTS
cram_block_get_data HTS::LibHTS
cram_block_get_method HTS::LibHTS
cram_block_get_offset HTS::LibHTS
cram_block_get_uncomp_size HTS::LibHTS
cram_block_set_comp_size HTS::LibHTS
cram_block_set_content_id HTS::LibHTS
cram_block_set_crc32 HTS::LibHTS
cram_block_set_data HTS::LibHTS
cram_block_set_offset HTS::LibHTS
cram_block_set_uncomp_size HTS::LibHTS
cram_block_size HTS::LibHTS
cram_block_update_size HTS::LibHTS
cram_check_EOF HTS::LibHTS
cram_cid2ds_free HTS::LibHTS
cram_cid2ds_query HTS::LibHTS
cram_close HTS::LibHTS
cram_codec_describe HTS::LibHTS
cram_codec_get_content_ids HTS::LibHTS
cram_compress_block HTS::LibHTS
cram_container_get_coords HTS::LibHTS
cram_container_get_landmarks HTS::LibHTS
cram_container_get_length HTS::LibHTS
cram_container_get_num_bases HTS::LibHTS
cram_container_get_num_blocks HTS::LibHTS
cram_container_get_num_records HTS::LibHTS
cram_container_is_empty HTS::LibHTS
cram_container_num2offset HTS::LibHTS
cram_container_offset2num HTS::LibHTS
cram_container_set_landmarks HTS::LibHTS
cram_container_set_length HTS::LibHTS
cram_container_set_num_blocks HTS::LibHTS
cram_container_size HTS::LibHTS
cram_copy_slice HTS::LibHTS
cram_decode_compression_header HTS::LibHTS
cram_decode_slice_header HTS::LibHTS
cram_describe_encodings HTS::LibHTS
cram_dopen HTS::LibHTS
cram_eof HTS::LibHTS
cram_expand_method HTS::LibHTS
cram_fd_get_fp HTS::LibHTS
cram_fd_get_header HTS::LibHTS
cram_fd_get_version HTS::LibHTS
cram_fd_set_fp HTS::LibHTS
cram_fd_set_header HTS::LibHTS
cram_fd_set_version HTS::LibHTS
cram_filter_container HTS::LibHTS
cram_flush HTS::LibHTS
cram_free_block HTS::LibHTS
cram_free_compression_header HTS::LibHTS
cram_free_container HTS::LibHTS
cram_free_slice_header HTS::LibHTS
cram_get_refs HTS::LibHTS
cram_index_extents HTS::LibHTS
cram_major_vers HTS::LibHTS
cram_minor_vers HTS::LibHTS
cram_new_block HTS::LibHTS
cram_new_container HTS::LibHTS
cram_num_containers HTS::LibHTS
cram_num_containers_between HTS::LibHTS
cram_open HTS::LibHTS
cram_read_block HTS::LibHTS
cram_read_container HTS::LibHTS
cram_seek HTS::LibHTS
cram_set_header HTS::LibHTS
cram_set_option HTS::LibHTS
cram_set_voption HTS::LibHTS
cram_slice_hdr_get_coords HTS::LibHTS
cram_slice_hdr_get_embed_ref_id HTS::LibHTS
cram_slice_hdr_get_num_blocks HTS::LibHTS
cram_store_container HTS::LibHTS
cram_transcode_rg HTS::LibHTS
cram_uncompress_block HTS::LibHTS
cram_update_cid2ds_map HTS::LibHTS
cram_write_block HTS::LibHTS
cram_write_container HTS::LibHTS
#delete HTS::Bcf::Header
#duplicate? HTS::Bam::Flag
#each HTS::Bam
#each HTS::Bcf
#each HTS::Bam::Aux
#each HTS::Bam::Cigar
#each_alt HTS::Bcf
#each_aux HTS::Bam
#each_chrom HTS::Bam
#each_chrom HTS::Bcf
#each_cigar HTS::Bam
#each_endpos HTS::Bcf
#each_filter HTS::Bcf
#each_flag HTS::Bam
#each_format HTS::Bcf
#each_id HTS::Bcf
#each_info HTS::Bcf
#each_insert_size HTS::Bam
#each_mapq HTS::Bam
#each_mate_chrom HTS::Bam
#each_mate_pos HTS::Bam
#each_pos HTS::Bam
#each_pos HTS::Bcf
#each_qname HTS::Bam
#each_qual HTS::Bam
#each_qual HTS::Bcf
#each_ref HTS::Bcf
#each_seq HTS::Bam
#endpos HTS::Bcf
#endpos HTS::Bam::Record
#endpos HTS::Bcf::Record
#eql? HTS::Bam::Cigar
errmod_cal HTS::LibHTS
errmod_destroy HTS::LibHTS
errmod_init HTS::LibHTS
#fai= HTS::Hts
fai_build HTS::LibHTS
fai_build3 HTS::LibHTS
fai_destroy HTS::LibHTS
fai_fetch HTS::LibHTS
fai_fetch64 HTS::LibHTS
fai_fetchqual HTS::LibHTS
fai_fetchqual64 HTS::LibHTS
fai_load HTS::LibHTS
fai_load3 HTS::LibHTS
fai_load3_format HTS::LibHTS
fai_load_format HTS::LibHTS
fai_parse_region HTS::LibHTS
fai_path HTS::LibHTS
fai_set_cache_size HTS::LibHTS
#faidx HTS::Faidx::Sequence
faidx_fetch_nseq HTS::LibHTS
faidx_fetch_qual HTS::LibHTS
faidx_fetch_qual64 HTS::LibHTS
faidx_fetch_seq HTS::LibHTS
faidx_fetch_seq64 HTS::LibHTS
faidx_has_seq HTS::LibHTS
faidx_iseq HTS::LibHTS
faidx_nseq HTS::LibHTS
faidx_seq_len HTS::LibHTS
#fetch_qual HTS::Faidx
#fetch_seq HTS::Faidx
#fields HTS::Bcf::Info
#fields HTS::Bcf::Format
#file_format HTS::Hts
#file_format HTS::Faidx
#file_format_version HTS::Hts
#file_name HTS::Bam
#file_name HTS::Bcf
#file_name HTS::Faidx
#file_name HTS::Tabix
#filter HTS::Bcf
#filter HTS::Bcf::Record
#find_key HTS::Bcf::HeaderRecord
#find_line HTS::Bam::Header
#find_line_at HTS::Bam::Header
#first HTS::Bam::Aux
#flag HTS::Bam
#flag HTS::Bam::Record
#flag= HTS::Bam::Record
#format HTS::Bcf
#format HTS::Bcf::Record
#get HTS::Bam::Aux
#get HTS::Bcf::Info
#get HTS::Bcf::Format
#get_flag HTS::Bcf::Info
#get_flag HTS::Bcf::Format
#get_float HTS::Bam::Aux
#get_float HTS::Bcf::Info
#get_float HTS::Bcf::Format
#get_hrec HTS::Bcf::Header
#get_int HTS::Bam::Aux
#get_int HTS::Bcf::Info
#get_int HTS::Bcf::Format
#get_string HTS::Bam::Aux
#get_string HTS::Bcf::Info
#get_string HTS::Bcf::Format
#get_tid HTS::Bam::Header
#get_version HTS::Bcf::Header
haddextension HTS::LibHTS
#has_flag? HTS::Bam::Flag
#has_key? HTS::Faidx
hclose HTS::LibHTS
hclose_abruptly HTS::LibHTS
hdopen HTS::LibHTS
#header HTS::Bam
#header HTS::Bcf
#header HTS::Bam::Record
#header HTS::Bcf::Record
hfile_has_plugin HTS::LibHTS
hfile_list_plugins HTS::LibHTS
hfile_list_schemes HTS::LibHTS
hfile_mem_get_buffer HTS::LibHTS
hfile_mem_steal_buffer HTS::LibHTS
hflush HTS::LibHTS
hgetdelim HTS::LibHTS
hgets HTS::LibHTS
hisremote HTS::LibHTS
hopen HTS::LibHTS
hpeek HTS::LibHTS
hrec_add_idx HTS::LibHTS
hseek HTS::LibHTS
htell HTS::LibHTS
hts_base_mod_state_alloc HTS::LibHTS
hts_base_mod_state_free HTS::LibHTS
hts_check_EOF HTS::LibHTS
hts_close HTS::LibHTS
hts_detect_format HTS::LibHTS
hts_detect_format2 HTS::LibHTS
hts_feature_string HTS::LibHTS
hts_features HTS::LibHTS
hts_flush HTS::LibHTS
hts_format_description HTS::LibHTS
hts_format_file_extension HTS::LibHTS
hts_free HTS::LibHTS
hts_get_bgzfp HTS::LibHTS
hts_get_format HTS::LibHTS
hts_get_log_level HTS::LibHTS
hts_getline HTS::LibHTS
hts_hopen HTS::LibHTS
hts_idx_destroy HTS::LibHTS
hts_idx_finish HTS::LibHTS
hts_idx_fmt HTS::LibHTS
hts_idx_get_meta HTS::LibHTS
hts_idx_get_n_no_coor HTS::LibHTS
hts_idx_get_stat HTS::LibHTS
hts_idx_init HTS::LibHTS
hts_idx_load HTS::LibHTS
hts_idx_load2 HTS::LibHTS
hts_idx_load3 HTS::LibHTS
hts_idx_nseq HTS::LibHTS
hts_idx_push HTS::LibHTS
hts_idx_save HTS::LibHTS
hts_idx_save_as HTS::LibHTS
hts_idx_seqnames HTS::LibHTS
hts_idx_set_meta HTS::LibHTS
hts_idx_tbi_name HTS::LibHTS
hts_itr_destroy HTS::LibHTS
hts_itr_multi_bam HTS::LibHTS
hts_itr_multi_cram HTS::LibHTS
hts_itr_multi_next HTS::LibHTS
hts_itr_next HTS::LibHTS
hts_itr_query HTS::LibHTS
hts_itr_querys HTS::LibHTS
hts_itr_regions HTS::LibHTS
hts_lib_shutdown HTS::LibHTS
hts_md5_destroy HTS::LibHTS
hts_md5_final HTS::LibHTS
hts_md5_hex HTS::LibHTS
hts_md5_init HTS::LibHTS
hts_md5_reset HTS::LibHTS
hts_md5_update HTS::LibHTS
hts_open HTS::LibHTS
hts_open_format HTS::LibHTS
hts_opt_add HTS::LibHTS
hts_opt_apply HTS::LibHTS
hts_opt_free HTS::LibHTS
hts_parse_decimal HTS::LibHTS
hts_parse_format HTS::LibHTS
hts_parse_opt_list HTS::LibHTS
hts_parse_reg HTS::LibHTS
hts_parse_reg64 HTS::LibHTS
hts_parse_region HTS::LibHTS
hts_readlines HTS::LibHTS
hts_readlist HTS::LibHTS
hts_reglist_create HTS::LibHTS
hts_reglist_free HTS::LibHTS
hts_set_cache_size HTS::LibHTS
hts_set_fai_filename HTS::LibHTS
hts_set_filter_expression HTS::LibHTS
hts_set_log_level HTS::LibHTS
hts_set_opt HTS::LibHTS
hts_set_thread_pool HTS::LibHTS
hts_set_threads HTS::LibHTS
hts_test_feature HTS::LibHTS
hts_tpool_delete_result HTS::LibHTS
hts_tpool_destroy HTS::LibHTS
hts_tpool_dispatch HTS::LibHTS
hts_tpool_dispatch2 HTS::LibHTS
hts_tpool_dispatch3 HTS::LibHTS
hts_tpool_init HTS::LibHTS
hts_tpool_kill HTS::LibHTS
hts_tpool_next_result HTS::LibHTS
hts_tpool_next_result_wait HTS::LibHTS
hts_tpool_process_attach HTS::LibHTS
hts_tpool_process_destroy HTS::LibHTS
hts_tpool_process_detach HTS::LibHTS
hts_tpool_process_empty HTS::LibHTS
hts_tpool_process_flush HTS::LibHTS
hts_tpool_process_init HTS::LibHTS
hts_tpool_process_is_shutdown HTS::LibHTS
hts_tpool_process_len HTS::LibHTS
hts_tpool_process_qsize HTS::LibHTS
hts_tpool_process_ref_decr HTS::LibHTS
hts_tpool_process_ref_incr HTS::LibHTS
hts_tpool_process_reset HTS::LibHTS
hts_tpool_process_shutdown HTS::LibHTS
hts_tpool_process_sz HTS::LibHTS
hts_tpool_result_data HTS::LibHTS
hts_tpool_size HTS::LibHTS
hts_tpool_wake_dispatch HTS::LibHTS
hts_version HTS::LibHTS
#id HTS::Bcf
#id HTS::Bcf::Record
#id2name HTS::Bcf::Header
#id= HTS::Bcf::Record
#index_loaded? HTS::Bam
#index_loaded? HTS::Bcf
#index_loaded? HTS::Tabix
#index_name HTS::Bam
#index_name HTS::Bcf
#index_name HTS::Tabix
#info HTS::Bcf
#info HTS::Bcf::Record
#initialize HTS::Bam
#initialize HTS::Bcf
#initialize HTS::Hts
#initialize HTS::Faidx
#initialize HTS::Tabix
#initialize HTS::Bam::Aux
#initialize HTS::Bam::Flag
#initialize HTS::Bcf::Info
#initialize HTS::Bam::Cigar
#initialize HTS::Bam::Header
#initialize HTS::Bam::Record
#initialize HTS::Bcf::Format
#initialize HTS::Bcf::Header
#initialize HTS::Bcf::Record
#initialize HTS::Faidx::Sequence
#initialize HTS::Bam::HeaderRecord
#initialize HTS::Bcf::HeaderRecord
#insert_size HTS::Bam
#insert_size HTS::Bam::Record
#insert_size= HTS::Bam::Record
int32_put_blk HTS::LibHTS
kf_betai HTS::LibHTS
kf_erfc HTS::LibHTS
kf_gammap HTS::LibHTS
kf_gammaq HTS::LibHTS
kf_lgamma HTS::LibHTS
kt_fisher_exact HTS::LibHTS
#len HTS::Bam::Record
#length HTS::Faidx
#length HTS::Bcf::Info
#length HTS::Bcf::Format
#length HTS::Faidx::Sequence
lib_path HTS
#load_index HTS::Bam
#load_index HTS::Bcf
#load_index HTS::Tabix
#mapq HTS::Bam
#mapq HTS::Bam::Record
#mapq= HTS::Bam::Record
#mate_chrom HTS::Bam
#mate_chrom HTS::Bam::Record
#mate_pos HTS::Bam
#mate_pos HTS::Bam::Record
#mate_pos= HTS::Bam::Record
#mate_reverse? HTS::Bam::Flag
#mate_strand HTS::Bam::Record
#mate_unmapped? HTS::Bam::Flag
#merge HTS::Bcf::Header
#mode HTS::Bam
#mode HTS::Bcf
#mode HTS::Tabix
#mtid HTS::Bam::Record
#mtid= HTS::Bam::Record
#name HTS::Faidx::Sequence
#name2id HTS::Tabix
#name2id HTS::Bcf::Header
#names HTS::Faidx
#nsamples HTS::Bcf
#nsamples HTS::Bcf::Header
#nthreads HTS::Bam
#nthreads HTS::Bcf
#nthreads HTS::Tabix
open HTS::Bam
open HTS::Bcf
open HTS::Faidx
open HTS::Tabix
#paired? HTS::Bam::Flag
parse HTS::Bam::Cigar
parse HTS::Bam::Header
#pos HTS::Bam
#pos HTS::Bcf
#pos HTS::Bam::Record
#pos HTS::Bcf::Record
#pos= HTS::Bam::Record
#pos= HTS::Bcf::Record
probaln_glocal HTS::LibHTS
#proper_pair? HTS::Bam::Flag
#qcfail? HTS::Bam::Flag
#qlen HTS::Bam::Cigar
#qlen HTS::Bam::Record
#qname HTS::Bam
#qname HTS::Bam::Record
#qname= HTS::Bam::Record
#qual HTS::Bam
#qual HTS::Bcf
#qual HTS::Bam::Record
#qual HTS::Bcf::Record
#qual HTS::Faidx::Sequence
#qual= HTS::Bcf::Record
#qual_string HTS::Bam::Record
#query HTS::Bam
#query HTS::Bcf
#query HTS::Tabix
#read1? HTS::Bam::Flag
#read2? HTS::Bam::Flag
#read_array_of_struct FFI::Pointer
#read_bcf HTS::Bcf::Header
#record HTS::Bam::Aux
#ref HTS::Bcf
#ref HTS::Bcf::Record
release HTS::LibHTS::HtsIdx
release HTS::LibHTS::SamHdr
release HTS::LibHTS::HtsTpool
release HTS::LibHTS::HtsItr
release HTS::LibHTS::Bam1
release HTS::LibHTS::Tbx
release HTS::LibHTS::Faidx
release HTS::LibHTS::BcfHrec
release HTS::LibHTS::BcfHdr
release HTS::LibHTS::Bcf1
#remove_line HTS::Bam::Header
#remove_line_at HTS::Bam::Header
#reverse? HTS::Bam::Flag
#rewind HTS::Hts
#rid HTS::Bcf::Record
#rid= HTS::Bcf::Record
#rlen HTS::Bam::Cigar
#rlen HTS::Bam::Record
sam_cap_mapq HTS::LibHTS
sam_format1 HTS::LibHTS
sam_hdr_add_line HTS::LibHTS
sam_hdr_add_lines HTS::LibHTS
sam_hdr_add_pg HTS::LibHTS
sam_hdr_change_HD HTS::LibHTS
sam_hdr_count_lines HTS::LibHTS
sam_hdr_destroy HTS::LibHTS
sam_hdr_dup HTS::LibHTS
sam_hdr_find_hd HTS::LibHTS
sam_hdr_find_line_id HTS::LibHTS
sam_hdr_find_line_pos HTS::LibHTS
sam_hdr_find_tag_hd HTS::LibHTS
sam_hdr_find_tag_id HTS::LibHTS
sam_hdr_find_tag_pos HTS::LibHTS
sam_hdr_incr_ref HTS::LibHTS
sam_hdr_init HTS::LibHTS
sam_hdr_length HTS::LibHTS
sam_hdr_line_index HTS::LibHTS
sam_hdr_line_name HTS::LibHTS
sam_hdr_name2tid HTS::LibHTS
sam_hdr_nref HTS::LibHTS
sam_hdr_parse HTS::LibHTS
sam_hdr_pg_id HTS::LibHTS
sam_hdr_read HTS::LibHTS
sam_hdr_remove_except HTS::LibHTS
sam_hdr_remove_line_id HTS::LibHTS
sam_hdr_remove_line_pos HTS::LibHTS
sam_hdr_remove_lines HTS::LibHTS
sam_hdr_remove_tag_hd HTS::LibHTS
sam_hdr_remove_tag_id HTS::LibHTS
sam_hdr_str HTS::LibHTS
sam_hdr_tid2len HTS::LibHTS
sam_hdr_tid2name HTS::LibHTS
sam_hdr_update_hd HTS::LibHTS
sam_hdr_update_line HTS::LibHTS
sam_hdr_write HTS::LibHTS
sam_idx_init HTS::LibHTS
sam_idx_save HTS::LibHTS
sam_index_build HTS::LibHTS
sam_index_build2 HTS::LibHTS
sam_index_build3 HTS::LibHTS
sam_index_load HTS::LibHTS
sam_index_load2 HTS::LibHTS
sam_index_load3 HTS::LibHTS
sam_itr_next HTS::LibHTS
sam_itr_queryi HTS::LibHTS
sam_itr_querys HTS::LibHTS
sam_itr_regarray HTS::LibHTS
sam_itr_regions HTS::LibHTS
sam_open_mode HTS::LibHTS
sam_open_mode_opts HTS::LibHTS
sam_parse1 HTS::LibHTS
sam_parse_cigar HTS::LibHTS
sam_parse_region HTS::LibHTS
sam_passes_filter HTS::LibHTS
sam_prob_realn HTS::LibHTS
sam_read1 HTS::LibHTS
sam_write1 HTS::LibHTS
#samples HTS::Bcf
#samples HTS::Bcf::Header
search_htslib HTS
search_htslib_windows HTS
#secondary? HTS::Bam::Flag
#seek HTS::Hts
#seq HTS::Bam
#seq HTS::Bam::Record
#seq HTS::Faidx::Sequence
#seq_len HTS::Faidx
#seqnames HTS::Tabix
#seqnames HTS::Bcf::Header
#set_threads HTS::Hts
#set_value HTS::Bcf::HeaderRecord
#set_version HTS::Bcf::Header
#size HTS::Bcf::Info
#size HTS::Bcf::Format
#strand HTS::Bam::Record
stringify_argv HTS::LibHTS
#struct HTS::Hts
#struct HTS::Faidx
#struct HTS::Bam::Header
#struct HTS::Bam::Record
#struct HTS::Bcf::Header
#struct HTS::Bcf::Record
#struct HTS::Bcf::HeaderRecord
struct_layout FFI::Struct
#supplementary? HTS::Bam::Flag
#sync HTS::Bcf::Header
#target_count HTS::Bam::Header
#target_len HTS::Bam::Header
#target_name HTS::Bam::Header
#target_names HTS::Bam::Header
#targets HTS::Bam::Header
tbx_bgzf_itr_next HTS::LibHTS
tbx_destroy HTS::LibHTS
tbx_index HTS::LibHTS
tbx_index_build HTS::LibHTS
tbx_index_build2 HTS::LibHTS
tbx_index_build3 HTS::LibHTS
tbx_index_load HTS::LibHTS
tbx_index_load2 HTS::LibHTS
tbx_index_load3 HTS::LibHTS
tbx_itr_destroy HTS::LibHTS
tbx_itr_next HTS::LibHTS
tbx_itr_queryi HTS::LibHTS
tbx_itr_querys HTS::LibHTS
tbx_name2id HTS::LibHTS
tbx_readrec HTS::LibHTS
tbx_seqnames HTS::LibHTS
#tell HTS::Hts
#tid HTS::Bam::Record
#tid= HTS::Bam::Record
#to_h HTS::Bam::Aux
#to_h HTS::Bcf::Info
#to_h HTS::Bcf::Format
#to_i HTS::Bam::Flag
#to_ptr HTS::Hts
#to_ptr HTS::Bam::Header
#to_ptr HTS::Bam::Record
#to_ptr HTS::Bcf::Header
#to_ptr HTS::Bcf::Record
#to_s HTS::Bam::Flag
#to_s HTS::Bam::Cigar
#to_s HTS::Bam::Header
#to_s HTS::Bam::Record
#to_s HTS::Bcf::Header
#to_s HTS::Bcf::Record
#to_s HTS::Bcf::HeaderRecord
union_layout FFI::Struct
#unmapped? HTS::Bam::Flag
#value HTS::Bam::Flag
vcf_format HTS::LibHTS
vcf_hdr_read HTS::LibHTS
vcf_hdr_write HTS::LibHTS
vcf_open_mode HTS::LibHTS
vcf_parse HTS::LibHTS
vcf_read HTS::LibHTS
vcf_write HTS::LibHTS
vcf_write_line HTS::LibHTS
#write HTS::Bam
#write HTS::Bcf
#write HTS::Bam::Header
#write_header HTS::Bam
#write_header HTS::Bcf
#| HTS::Bam::Flag
#~ HTS::Bam::Flag