class MinknowApi::Ui::SequencingRun::Presets::Preset

• MinknowApi::Ui::SequencingRun::Presets::Preset
• Reference
• Object

Included Modules

• Proto::Message

Defined in:

generated/minknow_api/ui/sequencing_run/presets.pb.cr

Constructors

• .decode(bytes : Bytes) : self

  Decode a message from a raw byte slice.

• .decode(io : IO) : self
• .decode_partial(bytes : Bytes) : self
• .decode_partial(io : IO) : self

Instance Method Summary

• #==(other : self) : Bool

  Returns true if this reference is the same as other.

• #adaptive_sampling_channel_end : UInt32
• #adaptive_sampling_channel_end=(adaptive_sampling_channel_end : UInt32)
• #adaptive_sampling_channel_start : UInt32
• #adaptive_sampling_channel_start=(adaptive_sampling_channel_start : UInt32)
• #adaptive_sampling_enabled : Bool
• #adaptive_sampling_enabled=(adaptive_sampling_enabled : Bool)
• #alignment_bed_file : String
• #alignment_bed_file=(alignment_bed_file : String)
• #alignment_enabled : Bool
• #alignment_enabled=(alignment_enabled : Bool)
• #alignment_ref_file : String
• #alignment_ref_file=(alignment_ref_file : String)
• #bam_enabled : Bool
• #bam_enabled=(bam_enabled : Bool)
• #barcode_balancing_barcode_selection : String
• #barcode_balancing_barcode_selection=(barcode_balancing_barcode_selection : String)
• #barcode_balancing_custom_barcodes : Bool
• #barcode_balancing_custom_barcodes=(barcode_balancing_custom_barcodes : Bool)
• #barcode_balancing_enabled : Bool
• #barcode_balancing_enabled=(barcode_balancing_enabled : Bool)
• #barcoding_enabled : Bool
• #barcoding_enabled=(barcoding_enabled : Bool)
• #basecall_model : String
• #basecall_model=(basecall_model : String)
• #basecalled_output_period : UInt32
• #basecalled_output_period=(basecalled_output_period : UInt32)
• #basecalling_enabled : Bool
• #basecalling_enabled=(basecalling_enabled : Bool)
• #bulk_file_enabled : Bool
• #bulk_file_enabled=(bulk_file_enabled : Bool)
• #bulk_file_events : String
• #bulk_file_events=(bulk_file_events : String)
• #bulk_file_events_enabled : Bool
• #bulk_file_events_enabled=(bulk_file_events_enabled : Bool)
• #bulk_file_raw : String
• #bulk_file_raw=(bulk_file_raw : String)
• #bulk_file_raw_enabled : Bool
• #bulk_file_raw_enabled=(bulk_file_raw_enabled : Bool)
• #bulk_file_read_table : String
• #bulk_file_read_table=(bulk_file_read_table : String)
• #bulk_file_read_table_enabled : Bool
• #bulk_file_read_table_enabled=(bulk_file_read_table_enabled : Bool)
• #clear_preset_meta : Nil
• #custom_barcodes_selection : String
• #custom_barcodes_selection=(custom_barcodes_selection : String)
• #duplex_basecalling_enabled : Bool
• #duplex_basecalling_enabled=(duplex_basecalling_enabled : Bool)
• #duplex_basecalling_model : String
• #duplex_basecalling_model=(duplex_basecalling_model : String)
• #encode(io : IO) : Nil
• #encode_partial(io : IO) : Nil
• #enrich_deplete_adaptive_sampling_bed_file : String
• #enrich_deplete_adaptive_sampling_bed_file=(enrich_deplete_adaptive_sampling_bed_file : String)
• #enrich_deplete_adaptive_sampling_enabled : Bool
• #enrich_deplete_adaptive_sampling_enabled=(enrich_deplete_adaptive_sampling_enabled : Bool)
• #enrich_deplete_adaptive_sampling_ref_file : String
• #enrich_deplete_adaptive_sampling_ref_file=(enrich_deplete_adaptive_sampling_ref_file : String)
• #fail_unaligned_reads : Bool
• #fail_unaligned_reads=(fail_unaligned_reads : Bool)
• #fast5_enabled : Bool
• #fast5_enabled=(fast5_enabled : Bool)
• #fastq_data_compression : Bool
• #fastq_data_compression=(fastq_data_compression : Bool)
• #fastq_enabled : Bool
• #fastq_enabled=(fastq_enabled : Bool)
• #has_custom_barcodes_selection : Bool
• #has_custom_barcodes_selection=(has_custom_barcodes_selection : Bool)
• #has_preset_meta? : Bool
• #modified_basecalling_context : String
• #modified_basecalling_context=(modified_basecalling_context : String)
• #modified_basecalling_enabled : Bool
• #modified_basecalling_enabled=(modified_basecalling_enabled : Bool)
• #mux_scan_period : Float32
• #mux_scan_period=(mux_scan_period : Float32)
• #pod5_enabled : Bool
• #pod5_enabled=(pod5_enabled : Bool)
• #preset_meta : PresetMeta | Nil
• #preset_meta=(preset_meta : PresetMeta | Nil)
• #read_filtering_enabled : Bool
• #read_filtering_enabled=(read_filtering_enabled : Bool)
• #read_filtering_max_readlength : UInt64
• #read_filtering_max_readlength=(read_filtering_max_readlength : UInt64)
• #read_filtering_min_qscore : UInt32
• #read_filtering_min_qscore=(read_filtering_min_qscore : UInt32)
• #read_filtering_min_readlength : UInt64
• #read_filtering_min_readlength=(read_filtering_min_readlength : UInt64)
• #require_barcodes_both_ends : Bool
• #require_barcodes_both_ends=(require_barcodes_both_ends : Bool)
• #reserved_pores : Bool
• #reserved_pores=(reserved_pores : Bool)
• #run_length_condition : Proto::OpenEnum(Preset::RunLengthCondition)
• #run_length_condition=(run_length_condition : Proto::OpenEnum(Preset::RunLengthCondition))
• #run_length_hours : Float32
• #run_length_hours=(run_length_hours : Float32)
• #should_enrich_adaptive_sampling_ref : Bool
• #should_enrich_adaptive_sampling_ref=(should_enrich_adaptive_sampling_ref : Bool)
• #simulated_playback_file_path : String
• #simulated_playback_file_path=(simulated_playback_file_path : String)
• #split_output_files_by_barcode : Bool
• #split_output_files_by_barcode=(split_output_files_by_barcode : Bool)
• #target_data_condition : Proto::OpenEnum(Preset::TargetDataCondition)
• #target_data_condition=(target_data_condition : Proto::OpenEnum(Preset::TargetDataCondition))
• #target_data_unit : Proto::OpenEnum(Preset::TargetDataUnit)
• #target_data_unit=(target_data_unit : Proto::OpenEnum(Preset::TargetDataUnit))
• #target_data_value : UInt64
• #target_data_value=(target_data_value : UInt64)
• #trim_barcodes_enabled : Bool
• #trim_barcodes_enabled=(trim_barcodes_enabled : Bool)
• #validate_required! : Nil
• #validate_required_deep! : Nil

Constructor Detail

Instance Method Detail